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Functional Cancer Genomics Laboratory

Image by Yassine Khalfalli

Research

The Functional Cancer Genomics Group studies the molecular mechanisms of cancer of various organs, including lung, liver, and bladder. We adapt traditional molecular cancer biology and classical biochemical approaches to next generation tools and technologies such as RNA-sequencing, CRISPR-based genome engineering and high-throughput functional screening. Our ambition is to advance knowledge on carcinogenesis mechanisms and explore drug targets for cancer.

News & Events

Latest Publications

Challenges in First-Line Osimertinib Therapy in EGFR-Mutant Non-small Cell Lung Cancer: Acquired Resistance Is the Issue

Bengisu Dayanc, Sude Eris, Serif Senturk

Interdisciplinary Cancer Research Book Series, Elsevier

Non-small cell lung cancer (NSCLC), the most common form of lung cancer, accounts for 85% of all new lung cancer cases and is the leading cause of cancer-related death worldwide. NSCLC histosubtypes include adenocarcinoma, large-cell carcinoma, and squamous cell carcinoma. Cancer driving mechanisms for some NSCLC adenocarcinomas involve activating mutations of the epidermal growth factor receptor gene (EGFR), which can be selectively targeted by a number of tyrosine kinase inhibitors (TKIs). First-generation EGFR-TKIs, erlotinib and gefitinib, and then second-generation inhibitors, afatinib and dacomitinib, are designed to target EGFR-activating mutations. However, these small molecules are unresponsive to EGFR-T790M mutation. To address this obstacle, newer-generation drug design gained acceleration. Osimertinib is a third-generation EGFR-TKI that irreversibly inhibits EGFR-activating mutations as well as EGFR-T790M resistance mutation, which frequently emerges in patients treated with first- and second-generation EGFR-TKIs. While osimertinib has been initially exploited in second-line therapy, it is now standard of care in first-line treatment due to the enhanced progression-free survival (PFS) in EGFR mutant NSCLC patients. Similar to earlier EGFR-TKIs, the long-standing obstacle in osimertinib therapy is the inevitable resistance. As far as resistance mechanisms are considered, it includes EGFR mutations and aberrant activation of bypass signaling pathways and downstream signaling components. This review aims to discuss histological subtypes of lung cancer; oncogenic drivers of NSCLC; EGFR-TKIs as a treatment modality, focusing on third-generation EGFR-TKI osimertinib; diverse resistance mechanisms that include EGFR dependent and independent pathways; and possible overcoming strategies to this issue.

Bilim
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